MRCFile

Inherits from: AbstractImageFile

Constructor

Has copy constructor: true

MRCFile();
MRCFile(std::string filename, bool overwrite = false);
MRCFile(std::string filename, bool overwrite, bool wait_for_file_to_exist);

Properties

public

std::fstream *my_file; MRCHeader my_header; wxString filename; bool do_nothing; // under special circumstances (like when the file is /dev/null), let’s not do anything at all bool rewrite_header_on_close; int max_number_of_seconds_to_wait_for_file_to_exist;

Note

Arguably all of these properties should probably be private.

private

TODO

search code to see if these are infact treated as private, and if so modify them there.

Methods

inline int ReturnXSize() {MyDebugAssertTrue(my_file->is_open(), “File not open!”); return my_header.ReturnDimensionX();}; inline int ReturnYSize() {MyDebugAssertTrue(my_file->is_open(), “File not open!”); return my_header.ReturnDimensionY();}; inline int ReturnZSize() {MyDebugAssertTrue(my_file->is_open(), “File not open!”); return my_header.ReturnDimensionZ();}; inline int ReturnNumberOfSlices() {MyDebugAssertTrue(my_file->is_open(), “File not open!”); return my_header.ReturnDimensionZ();};

inline bool IsOpen() {return my_file->is_open();}

OpenFile void CloseFile(); void FlushFile();

ReadSliceFromDisk void ReadSlicesFromDisk(int start_slice, int end_slice, float *output_array);

inline void WriteSliceToDisk(int slice_number, float *input_array) {WriteSlicesToDisk(slice_number, slice_number, input_array);} void WriteSlicesToDisk(int start_slice, int end_slice, float *input_array);

inline void WriteHeader() {my_header.WriteHeader(my_file);};

void PrintInfo();

float ReturnPixelSize(); void SetPixelSize(float wanted_pixel_size); inline void SetDensityStatistics( float wanted_min, float wanted_max, float wanted_mean, float wanted_rms ){my_header.SetDensityStatistics(wanted_min, wanted_max, wanted_mean, wanted_rms);}